rs75451252 chr1:11908325 A>G
- Sequence
ttccgttaaatcgcgtgtggagct[A/G]tgtaaagtgtattatagaacaaat
- ASB in cell types
- K562 (myelogenous leukemia) SK-N-SH (neuroblastoma) foreskin keratinocyte upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN ILF3_HUMAN COE3_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.74 | 0.77 | 1.30 | n/a | No Hit | |||
| ILF3_HUMAN | 0.79 | n/a | 1.33 | n/a | n/a | |||
| COE3_HUMAN | 1.82 | -1.47 | 1.33 | n/a | n/a | |||
| CEBPB_HUMAN | -1.64 | 1.45 | 1.33 | n/a | No Hit | |||
| FOXA2_HUMAN | -2.06 | 1.80 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Testis, Thyroid, Whole_Blood