rs754554 chr7:24719199 G>T
- Sequence
cttccagcacctgctggagcacag[G/T]gtttctcagatttattgttctgaa
- ASB in cell types
- GM12878 (female B-cells) NALM-6 (adult B acute lymphoblastic leukemia)
- ASB for transcription factors
- IKZF1_HUMAN GCR_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 3.10 | -0.22 | 1.33 | n/a | No Hit | |||
| GCR_HUMAN | 2.25 | -1.95 | 2.00 | 3.12 | Discordant | |||
| REQU_HUMAN | 2.05 | n/a | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Ovary, Spleen, Uterus, Vagina