rs755341 chr17:80196327 T>C
- Sequence
ttctgtgggtcgcagaatcagaaa[T/C]cttcatctttggggactcatacac
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RAD21_HUMAN BMI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.13 | 1.09 | 2.56 | n/a | n/a | |||
| BMI1_HUMAN | -2.56 | 2.36 | 1.33 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood