rs7555491 chr1:223707187 A>G
- Sequence
taaagaaaaatactactgaaaaag[A/G]ttccattgccatggccctctgaga
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) breast tumor tissue
- ASB for transcription factors
- SMCA4_HUMAN ESR1_HUMAN HTF4_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | 1.37 | -3.78 | 2.50 | n/a | n/a | |||
| ESR1_HUMAN | 1.31 | n/a | 2.50 | n/a | No Hit | |||
| HTF4_HUMAN | 2.39 | 0.19 | 1.92 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg