rs757229 chr19:1102115 G>C
- Sequence
caggcctgagtcgggggcagtggc[G/C]ggggcaggctcatagcacccccca
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) CD14+ monocytes
- ASB for transcription factors
- CTCF_HUMAN ZN335_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.23 | 0.96 | 1.44 | n/a | No Hit | |||
| ZN335_HUMAN | n/a | 2.02 | 2.00 | -0.59 | Weak Discordant | |||
| STAT1_HUMAN | 1.68 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Thyroid, Whole_Blood