ADASTRA v1.6.10
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rs7573804
chr2:40554857
T
>
C
Sequence
ttcactgtcttccactttggaaga[T/C]accatcacaatcacaatctcaatg
ASB in cell types
foreskin keratinocyte
CD34+ stem cells-derived erythroblasts
HCPEpiC (choroid plexus epithelial cells)
keratinocytes
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(+2 others)
ASB for transcription factors
CTCF_HUMAN
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View in PheLiGe
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
1.07
0.30
8.5·10
-4
1.00
1.44
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration (geographic atrophy)
,
hdl cholesterol
,
refractive error
,
total cholesterol
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)