rs75768611 chr11:59802762 G>A
- Sequence
aatgatctggtgccaccatgtggt[G/A]atttttattcaggttttagaatgc
- ASB in cell types
- A549 (lung carcinoma) gastrocnemius medialis spleen stomach
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.81 | 1.14 | 1.47 | -0.07 | Weak Concordant | |||
| SMC3_HUMAN | -0.49 | 1.32 | 1.99 | n/a | n/a | |||
| RAD21_HUMAN | -0.21 | 1.44 | 1.95 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Hypothalamus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis, Whole_Blood