rs758575 chr10:116288159 G>A
- Sequence
ataacctaattgcaaaggcagtaa[G/A]tagcacaccaagaaatctagtgga
- ASB in cell types
- A549 (lung carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- SMC3_HUMAN FOXA1_HUMAN RAD21_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | -0.24 | 1.03 | 1.94 | n/a | n/a | |||
| FOXA1_HUMAN | -0.67 | 1.61 | 1.75 | n/a | No Hit | |||
| RAD21_HUMAN | 0.12 | 0.99 | 1.84 | n/a | n/a | |||
| CTCF_HUMAN | 0.43 | 0.68 | 1.45 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), prop taste detection threshold