rs759189 chr16:4958307 C>T
- Sequence
aggggcggggccaggccaggatct[C/T]cgctgtcccgggtcctggagctct
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- REST_HUMAN EGR1_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | -0.21 | 0.84 | 1.90 | -0.33 | Weak Discordant | |||
| EGR1_HUMAN | -0.40 | 1.40 | 1.83 | n/a | No Hit | |||
| HDAC1_HUMAN | -1.08 | 1.61 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Stomach, Thyroid, Whole_Blood