rs7593864 chr2:24971872 G>A
- Sequence
gactttgatgcggagagacctgcc[G/A]ggctccttccgcttcggcatgttg
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes HEK293T (embryonic kidney)
- ASB for transcription factors
- EGR1_HUMAN NCOR1_HUMAN STAT1_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | n/a | 2.08 | 2.00 | n/a | No Hit | |||
| NCOR1_HUMAN | -3.75 | 2.29 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | -3.32 | 1.74 | 2.50 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.56 | 1.65 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood