rs760632 chr6:16128841 A>G
- Sequence
actctgagcagcgtcgcccagcgg[A/G]cagaggcggctggtgtgttccggg
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) adrenal gland MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN BC11B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.96 | 0.61 | 1.46 | -0.20 | Weak Concordant | |||
| RAD21_HUMAN | 1.10 | 0.18 | 1.36 | n/a | n/a | |||
| SMC3_HUMAN | 1.04 | 0.28 | 1.20 | n/a | n/a | |||
| BC11B_HUMAN | -1.42 | 1.85 | 2.00 | n/a | n/a | |||
| NFYC_HUMAN | 2.17 | -3.00 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg