rs760633 chr6:16128734 C>G
- Sequence
gagtgatccaagatatttgaagaa[C/G]agtggcagcttggaggtgtttaat
- ASB in cell types
- MDA-MB-453 (breast adenocarcinoma) GM12878 (female B-cells) HepG2 (hepatoblastoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN FOXK2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.62 | n/a | 2.11 | n/a | No Hit | |||
| ANDR_HUMAN | 1.62 | 0.10 | 1.46 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.38 | -2.50 | 1.67 | n/a | n/a | |||
| CTCF_HUMAN | 0.79 | 0.25 | 1.45 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP abnormal involuntary movement scale, ldl cholesterol, tardive dyskinesia, total cholesterol, waist hip ratio