rs761723 chr20:23350083 A>G
- Sequence
gcccctcaagcctcagggcagtgg[A/G]gagccgccgtcacgcccccgcctc
- ASB in cell types
- HEK293 (embryonic kidney) foreskin keratinocyte GM12878 (female B-cells) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN AP2C_HUMAN SP2_HUMAN JUN_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.43 | 1.05 | 1.32 | n/a | No Hit | |||
| AP2C_HUMAN | 1.78 | -0.17 | 1.92 | n/a | No Hit | |||
| SP2_HUMAN | -1.14 | 1.83 | 2.00 | 1.05 | Weak Concordant | |||
| JUN_HUMAN | 1.31 | -0.75 | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis