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rs7623663 chr3:149224171 G>T

Sequence
atcaaaaggcatgtggcaggaagt[G/T]gggagaattctctgagccttagga
ASB in cell types
GM12878 (female B-cells)
ASB for transcription factors
ELF1_HUMAN IKZF2_HUMAN ENL_HUMAN IKZF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ELF1_HUMAN 2.63 -3.06 2.7·10-51.00 1.33 -2.51 Concordant
IKZF2_HUMAN 2.02 -1.75 8.3·10-31.00 1.33 n/a n/a
ENL_HUMAN 2.04 -1.95 0.011.00 1.33 n/a n/a
IKZF1_HUMAN 1.81 -1.84 0.011.00 1.33 6.58 Discordant
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Motif analysis

ELF1_HUMAN Concordant
ELF1_HUMAN pic

Genetic associations

GRASP neuroblastoma (brain cancer) systolic blood pressure (sbp) transmission distortion variant creutzfeldt-jakob disease
GTEx eQTL Brain_Cortex Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Cells_Cultured_fibroblasts Esophagus_Muscularis Testis

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