rs7624838 chr3:184011323 G>A
- Sequence
gataaaaatctactctcaaacatc[G/A]tagccattagggaactgcaaatta
- ASB in cell types
- T47D (invasive ductal carcinoma) MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN HIF3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.36 | 0.08 | 2.17 | n/a | No Hit | |||
| ESR1_HUMAN | 1.05 | 0.11 | 2.02 | n/a | No Hit | |||
| HIF3A_HUMAN | 2.08 | n/a | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Whole_Blood