rs7625068 chr3:196528925 C>T
- Sequence
cgggggccgcgggagtggagccgg[C/T]ccgagcctccagggggcgctggcg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) CD14+ monocytes SK-N-SH (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.59 | 0.35 | 1.40 | n/a | No Hit | |||
| STAT1_HUMAN | n/a | 2.10 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood