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rs762669 chr22:50504994 G>A

Sequence
gtaggagtacggcacctggagaca[G/A]gtgggaggttctcagggctgccct
ASB in cell types
keratinocytes HEK293 (embryonic kidney)
ASB for transcription factors
SNAI2_HUMAN ZFHX2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN 1.98 -1.27 4.2·10-41.00 1.50 -4.43 Concordant
ZFHX2_HUMAN -1.67 2.12 1.000.03 2.00 n/a n/a
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Motif analysis

SNAI2_HUMAN Concordant
SNAI2_HUMAN pic

Genetic associations

GRASP mean corpuscular volume (mcv)
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Cerebellum Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Transverse Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Pancreas Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Testis Thyroid Whole_Blood

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