rs7646292 chr3:30258978 G>A
- Sequence
cagagagctttttacaaatctgct[G/A]tttacctaagagaggcaccctgtg
- ASB in cell types
- A549 (lung carcinoma) VCaP (prostate carcinoma) LNCaP (prostate carcinoma) liver
- ASB for transcription factors
- FOXA1_HUMAN FOXA2_HUMAN ANDR_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.03 | 0.08 | 3.00 | -1.90 | Weak Concordant | |||
| FOXA2_HUMAN | 2.27 | -0.37 | 2.27 | -1.97 | Weak Concordant | |||
| ANDR_HUMAN | 1.75 | 0.25 | 1.57 | n/a | No Hit | |||
| GCR_HUMAN | 2.04 | -0.32 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.47 | -0.23 | 1.89 | n/a | No Hit |
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Motif analysis
