rs768498 chr10:69438728 G>A
- Sequence
gctgccgctgagctgagctcagta[G/A]acaggaacgaggaagttaaaatgc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- ZNF24_HUMAN FOXK2_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZNF24_HUMAN | -1.31 | 1.60 | 1.39 | n/a | n/a | |||
| FOXK2_HUMAN | -1.42 | 1.27 | 1.33 | n/a | n/a | |||
| FOXA1_HUMAN | -0.16 | 1.01 | 1.87 | 6.59 | Concordant |
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Motif analysis
Genetic associations
GRASP arthritis including non-rheumatoid, college completion, eye color, fasting blood glucose, total cholesterol, years of education
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood