ADASTRA v1.6.10
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adastra.autosome.org
rs770028
chr1:9110819
G
>
A
Sequence
ggaaaagttaggtgagttatttgc[G/A]tcactgattgtgaaattccacagt
ASB in cell types
HEK293 (embryonic kidney)
GM12878 (female B-cells)
VCaP (prostate carcinoma)
ASB for transcription factors
CEBPA_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPA_HUMAN
1.42
-0.68
0.05
1.00
1.42
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
irritible bowel syndrome
GTEx eQTL
Artery_Tibial
,
Cells_Cultured_fibroblasts
,
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Muscle_Skeletal
,
Nerve_Tibial
,
Skin_Sun_Exposed_Lower_leg
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)