rs7719988 chr5:56314748 T>G
- Sequence
cactgagacttgtgcctgagtgct[T/G]ccccctaggggttctctgtgacat
- ASB in cell types
- A549 (lung carcinoma) 22RV1 (prostate carcinoma) transverse colon GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.28 | 1.82 | 1.45 | 2.67 | Concordant | |||
| IKZF1_HUMAN | -1.33 | 1.23 | 1.33 | n/a | No Hit |
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Motif analysis
