ADASTRA v1.6.10
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rs772562
chr12:62911601
T
>
C
Sequence
ccccagcatttacttatttctgag[T/C]ctttgcacatcagtttctactttc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ZN316_HUMAN
CTBP1_HUMAN
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Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN316_HUMAN
n/a
2.36
1.00
2.7·10
-3
2.00
n/a
n/a
CTBP1_HUMAN
n/a
2.32
1.00
9.3·10
-3
2.00
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration (geographic atrophy)
,
ldl cholesterol
,
partial epilepsy
,
refractive error
,
sporadic creutzfeldt-jakob disease
,
stabilized warfarin dose
GTEx eQTL
Artery_Tibial
,
Cells_Cultured_fibroblasts
,
Muscle_Skeletal
,
Skin_Sun_Exposed_Lower_leg
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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log2(Alt/Ref motif p-value)