rs7728485 chr5:139697559 A>G
- Sequence
tggctggtggggggcggagtgggg[A/G]gtggggggactgtgccgctgccgc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293T (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ETV1_HUMAN GABP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ETV1_HUMAN | 2.48 | -3.36 | 1.50 | n/a | No Hit | |||
| GABP1_HUMAN | 1.87 | -1.65 | 1.67 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood