rs773121 chr12:56104457 G>A
- Sequence
ggcaaggccccagggcctggctta[G/A]gagcgcgagaggcaggctgggaat
- ASB in cell types
- HUES64 (embryonic stem cells) cranial neural crest cells CD14+ monocytes HAEC (human aortic endothelial cells)
- ASB for transcription factors
- OTX2_HUMAN AP2A_HUMAN STAT1_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OTX2_HUMAN | -3.41 | 2.92 | 1.33 | n/a | No Hit | |||
| AP2A_HUMAN | 2.52 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.13 | -3.37 | 2.50 | n/a | No Hit | |||
| TF65_HUMAN | 1.79 | -1.06 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood