rs7736549 chr5:80083715 C>A
- Sequence
atatatttggctccccctagtgga[C/A]tgtaagcatattgacaataaagga
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte GM12878 (female B-cells) VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.97 | 0.32 | 1.62 | -1.64 | Weak Concordant | |||
| RAD21_HUMAN | 1.22 | -0.00 | 1.75 | n/a | n/a | |||
| FOXA1_HUMAN | 0.80 | 0.26 | 1.57 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP acute lung injury following major trauma, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, birth weight, hdl cholesterol, hdl cholesterol change with statins, ldl cholesterol, total cholesterol, urinary albumin-to-creatinine ratio