rs7752190 chr6:134537209 T>C
- Sequence
ctagggaagggatggcatgccatc[T/C]gctgaattttgagtgtggcatctt
- ASB in cell types
- foreskin keratinocyte A549 (lung carcinoma) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.74 | -0.46 | 2.38 | -2.27 | Concordant | |||
| RAD21_HUMAN | 1.56 | -1.09 | 1.24 | n/a | n/a | |||
| SMC3_HUMAN | 0.96 | -0.53 | 1.20 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
