rs7793710 chr7:73557201 C>G
- Sequence
ggctgggccgggcgcgggcaccga[C/G]gccaggcagctccagtccgggccg
- ASB in cell types
- K562 (myelogenous leukemia) cranial neural crest cells thymus-derived CD34- cells VCaP (prostate carcinoma)
- ASB for transcription factors
- BC11B_HUMAN COT1_HUMAN AP2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | 2.44 | n/a | 2.00 | n/a | n/a | |||
| COT1_HUMAN | 1.72 | -0.62 | 1.56 | 5.81 | Discordant | |||
| AP2A_HUMAN | 1.74 | -1.45 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood