rs77956314 chr12:116885562 T>C
- Sequence
gcccctgagactgtggcatgttgc[T/C]atggcacccctagcaaacaaatat
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | -1.98 | 2.61 | 2.00 | 2.35 | Concordant |
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Motif analysis
Genetic associations
EMBL-EBI dentate gyrus granule cell layer volume, dentate gyrus molecular layer volume, hata volume, hippocampal subfield ca1 volume, hippocampal subfield ca3 volume, hippocampal subfield ca4 volume, hippocampal tail volume, hippocampal volume, subcortical brain region volumes, subiculum volume, total hippocampal volume
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Liver, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood