rs77980086 chr3:47522280 G>A
- Sequence
ttatctccagcacacccaccagag[G/A]gcagcagacactggctaaagctct
- ASB in cell types
- VCaP (prostate carcinoma) Jurkat (T-cells) Th1-cells human cardiac myocytes
- ASB for transcription factors
- CTCF_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.37 | 0.50 | 1.41 | -6.09 | Concordant | |||
| TBX21_HUMAN | 1.89 | n/a | 1.33 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood