rs78383914 chr1:39816963 A>G
- Sequence
tggttcccaccgtcatctcccccg[A/G]gatgctaggctgtttgtgtccacc
- ASB in cell types
- K562 (myelogenous leukemia) erythroid cells SUM159PT (pleiomorphic breast carcinoma) 786-O (renal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SP1_HUMAN BCOR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.73 | 0.50 | 1.39 | n/a | No Hit | |||
| SP1_HUMAN | 1.59 | -1.32 | 1.00 | n/a | No Hit | |||
| BCOR_HUMAN | 1.94 | -1.67 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood