rs78436524 chr7:156893407 C>T
- Sequence
ggggctaccccagttaaggaggcg[C/T]tgtcctggcgtcggatggggacgg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) foreskin keratinocyte MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RFX1_HUMAN FOXK2_HUMAN KDM5B_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.04 | 0.38 | 1.66 | n/a | No Hit | |||
| RFX1_HUMAN | -1.87 | 1.99 | 1.44 | 2.56 | Concordant | |||
| FOXK2_HUMAN | 1.73 | 0.78 | 1.58 | n/a | n/a | |||
| KDM5B_HUMAN | 1.86 | 0.79 | 2.60 | n/a | n/a | |||
| RB_HUMAN | 2.35 | -2.77 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid