rs784599 chr1:39672835 A>G
- Sequence
tgctggccctttggtggtcagcag[A/G]gggcgcgcattcctaggcccccac
- ASB in cell types
- pancreas foreskin keratinocyte IPSC-derived bipolar neuron gastrocnemius medialis
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.52 | 1.74 | 1.39 | 0.75 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas