rs7854134 chr9:38672526 C>T
- Sequence
gcttgttatgtgagcgctgagggc[C/T]ctgctgccccctgctgggtctgta
- ASB in cell types
- esophagus squamous epithelium Peyer's patch adrenal gland pancreas
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN COT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.16 | 2.13 | 1.39 | n/a | No Hit | |||
| RAD21_HUMAN | -0.69 | 1.48 | 1.33 | n/a | n/a | |||
| COT1_HUMAN | 1.41 | -1.29 | 1.67 | n/a | No Hit | |||
| ESR1_HUMAN | 1.95 | n/a | 2.00 | -2.89 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Mucosa, Heart_Left_Ventricle, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid