rs790103 chr3:122651935 A>C
- Sequence
tccaacagacctgcagctgaggga[A/C]ctgactgttagacggaaaattaac
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma) HepG2 (hepatoblastoma) pancreas
- ASB for transcription factors
- ANDR_HUMAN CEBPA_HUMAN BCL6_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.86 | -1.96 | 1.50 | n/a | No Hit | |||
| CEBPA_HUMAN | 2.30 | -3.03 | 1.50 | n/a | No Hit | |||
| BCL6_HUMAN | 1.94 | -1.67 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 1.16 | -0.02 | 1.39 | -2.50 | Concordant |
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Motif analysis
