rs790108 chr3:122681785 A>G
- Sequence
gtcggcaaagttccctccttacag[A/G]cccaccactacttggtgggccaag
- ASB in cell types
- HCT-116 (colon carcinoma)
- ASB for transcription factors
- ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.26 | 1.26 | 1.17 | 3.88 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellum, Brain_Cortex, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis