rs7910099 chr10:99906644 G>A
- Sequence
gtgactcatgactcatgccacgtc[G/A]tgaggaaagcccagggagaggctc
- ASB in cell types
- epithelial cell of prostate A549 (lung carcinoma) Tet21N (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN EP300_HUMAN MYCN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.06 | 1.11 | 1.71 | n/a | No Hit | |||
| EP300_HUMAN | -1.22 | 1.38 | 1.39 | n/a | n/a | |||
| MYCN_HUMAN | -1.91 | 1.84 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, height, ldl cholesterol, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood