rs791349 chr5:173766430 G>C
- Sequence
gtctatgtgggtgtgcctctgtgg[G/C]tgtgtggcatgacttgtctccttt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- ESR1_HUMAN JUN_HUMAN GCR_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.70 | 1.57 | 3.21 | 2.91 | Concordant | |||
| JUN_HUMAN | 0.04 | 1.55 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | -0.57 | 1.84 | 2.18 | n/a | No Hit | |||
| RAD21_HUMAN | 0.33 | 1.23 | 1.95 | n/a | n/a | |||
| EP300_HUMAN | -0.41 | 1.72 | 2.05 | n/a | n/a |
Items per page:
1 – 5 of 9
Motif analysis
