rs79194220 chr7:99616920 C>G
- Sequence
gagaggacacggaagcgagtcttt[C/G]cttacgcacctgtctaacagcgtc
- ASB in cell types
- GM12878 (female B-cells) K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CREB1_HUMAN FOXK2_HUMAN HTF4_HUMAN TGIF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -0.07 | 1.16 | 1.33 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.53 | 0.93 | 1.33 | n/a | n/a | |||
| HTF4_HUMAN | 2.49 | n/a | 1.33 | n/a | No Hit | |||
| TGIF2_HUMAN | 1.86 | n/a | 1.00 | n/a | n/a | |||
| E4F1_HUMAN | 2.00 | n/a | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood