rs7920217 chr10:103908414 C>T
- Sequence
gcagctacacagtaccgcctgggc[C/T]gctggccttgtttcagctgcggga
- ASB in cell types
- HCT-116 (colon carcinoma) A549 (lung carcinoma) SK-N-SH (neuroblastoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN FOSL1_HUMAN HTF4_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.90 | 0.53 | 1.96 | n/a | No Hit | |||
| FOSL1_HUMAN | 2.65 | n/a | 2.00 | n/a | No Hit | |||
| HTF4_HUMAN | 2.25 | -2.30 | 1.33 | 2.31 | Discordant | |||
| STAT1_HUMAN | 2.22 | n/a | 2.00 | n/a | No Hit | |||
| FOSL2_HUMAN | 2.02 | -0.84 | 1.67 | n/a | No Hit |
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Motif analysis
