rs79230237 chr9:38069466 T>C
- Sequence
cctgcacacgccacctcccgcggc[T/C]gccctggcgccagcaccagggtct
- ASB in cell types
- cranial neural crest cells K562 (myelogenous leukemia)
- ASB for transcription factors
- AP2A_HUMAN COT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 2.14 | 0.02 | 1.75 | -1.51 | Weak Concordant | |||
| COT1_HUMAN | 2.21 | -0.31 | 1.67 | n/a | No Hit | |||
| ESR1_HUMAN | -1.64 | 2.16 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid