rs796291 chr3:12480072 G>A
- Sequence
gtctgaaatactacagggttcaac[G/A]ctatttcagaaaaacaatggggcg
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte hASC (preadipocytes) neutrophils
- ASB for transcription factors
- SMC3_HUMAN CTCF_HUMAN RAD21_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | -0.02 | 1.35 | 1.80 | n/a | n/a | |||
| CTCF_HUMAN | 0.65 | 0.77 | 1.47 | n/a | No Hit | |||
| RAD21_HUMAN | 0.25 | 1.25 | 1.81 | n/a | n/a | |||
| FOXK2_HUMAN | n/a | 1.66 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid