rs79633517 chr17:74514533 T>G
- Sequence
tgtgatgggtgatgccatgtgaca[T/G]gtggtcatgtgacaggtgatgtca
- ASB in cell types
- K562 (myelogenous leukemia) coronary artery smooth muscle gastrocnemius medialis
- ASB for transcription factors
- JUN_HUMAN JUND_HUMAN REST_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.85 | n/a | 1.50 | n/a | No Hit | |||
| JUND_HUMAN | 2.66 | n/a | 1.50 | n/a | No Hit | |||
| REST_HUMAN | 1.12 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 2.38 | -2.42 | 1.33 | n/a | No Hit | |||
| MNT_HUMAN | 0.77 | -0.03 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood