rs796364 chr2:199851396 C>A
- Sequence
ttaatgactttaaaggggcattgg[C/A]atctaatgatcaggtctttgccta
- ASB in cell types
- foreskin keratinocyte LNCaP (prostate carcinoma) PC9 (lung adenocarcinoma) HEK293 (embryonic kidney)
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| foreskin keratinocyte | n/a | 1.17 | 2.17 | |||
| LNCaP (prostate carcinoma) | 1.88 | -0.30 | 2.00 | |||
| PC9 (lung adenocarcinoma) | -3.84 | 2.23 | 2.50 | |||
| HEK293 (embryonic kidney) | 0.42 | 0.49 | 1.28 | |||
| OCI-LY7 (diffuse large B-cell lymphoma) | 1.61 | -1.49 | 1.33 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood