rs7973612 chr12:52164088 T>C
- Sequence
tcaggctccgaagaagcactgtct[T/C]gtcacggccagcagagggcagagg
- ASB in cell types
- H1 (embryonic stem cells) HepG2 (hepatoblastoma) HeLa S3 (cervical adenocarcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN CLOCK_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.57 | 0.48 | 1.37 | n/a | No Hit | |||
| RAD21_HUMAN | 2.00 | 0.86 | 1.35 | n/a | n/a | |||
| SMC3_HUMAN | 1.62 | 0.29 | 1.31 | n/a | n/a | |||
| CLOCK_HUMAN | 2.22 | n/a | 2.00 | n/a | No Hit |
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