rs79841350 chr8:23692783 G>A
- Sequence
tttggggggaatttcctctttccc[G/A]cagtgggaaactggaggcaatggt
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) erythroid progenitors epidermal keratinocytes
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.33 | 0.02 | 1.76 | n/a | n/a | |||
| RAD21_HUMAN | 1.47 | 0.32 | 1.93 | n/a | n/a | |||
| IKZF1_HUMAN | -0.43 | 1.93 | 2.00 | 2.44 | Concordant |
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Motif analysis
