rs798549 chr7:2721116 C>A
- Sequence
caaaacgaccgactctattgaaga[C/A]acactgggtggcgcgggaggttcc
- ASB in cell types
- RH4 (alveolar rhabdomyosarcoma) foreskin keratinocyte HEK293 (embryonic kidney) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN ZN189_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.36 | 1.95 | 1.55 | 1.08 | Weak Concordant | |||
| ESR1_HUMAN | -3.87 | 2.27 | 2.50 | n/a | No Hit | |||
| ZN189_HUMAN | -2.39 | 2.13 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Thyroid