rs798763 chr4:1729894 T>C
- Sequence
ctaggtaacgggtgccttcccaag[T/C]gctggtgttaccgctagaccaggg
- ASB in cell types
- K562 (myelogenous leukemia) bipolar neuron LNCaP (prostate carcinoma) IPSC-derived bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN KAISO_HUMAN ATF3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.01 | 1.82 | 1.40 | n/a | No Hit | |||
| KAISO_HUMAN | n/a | 0.69 | 2.00 | n/a | No Hit | |||
| ATF3_HUMAN | -3.16 | 2.32 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood