rs799451 chr7:44751389 G>A
- Sequence
gggcagcctgtcatcaccagctgc[G/A]agctggttttgatgtgctgcagtt
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM12878 (female B-cells)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | 0.71 | -0.14 | 1.54 | |||
| K562 (myelogenous leukemia) | 0.47 | -0.31 | 1.96 | |||
| GM12878 (female B-cells) | 0.59 | 0.68 | 1.32 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood