rs79963079 chr19:48322041 A>C
- Sequence
gccacgccccctctggttacaccc[A/C]ctcgctctgtaaggcacgccccct
- ASB in cell types
- HEK293 (embryonic kidney) cranial neural crest cells NB4 (acute promyelocytic leukemia ) Jurkat (T-cells)
- ASB for transcription factors
- AP2A_HUMAN SP7_HUMAN ZN398_HUMAN MYB_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | -3.55 | 2.45 | 2.00 | n/a | No Hit | |||
| SP7_HUMAN | -1.98 | 1.76 | 1.50 | n/a | n/a | |||
| ZN398_HUMAN | n/a | 2.34 | 2.00 | n/a | n/a | |||
| MYB_HUMAN | 0.91 | 0.31 | 1.48 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood