rs8003601 chr14:51005472 A>G
- Sequence
tcacttcagtaccatgactcatga[A/G]tcttgggattctttgtgtacttag
- ASB in cell types
- A549 (lung carcinoma) LNCaP (prostate carcinoma) pancreatic ductal adenocarcinoma
- ASB for transcription factors
- JUN_HUMAN FOXA1_HUMAN EP300_HUMAN GCR_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.42 | 1.58 | 2.05 | 4.39 | Concordant | |||
| FOXA1_HUMAN | 0.92 | 1.02 | 1.73 | n/a | No Hit | |||
| EP300_HUMAN | -1.10 | 1.80 | 2.00 | n/a | n/a | |||
| GCR_HUMAN | -2.02 | 2.00 | 2.17 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Nerve_Tibial, Testis